Entering edit mode
9.0 years ago
pengchy
▴
450
Hi all,
I am confused with the "intron-redundant" meaning. My understanding is: the two transcript are differed only at one intron or exon with one end difference (-F). What is "-F" meaning here? Thanks!
cuffcompare -C include the "contained" transcripts in the .combined.gtf file -F do not discard intron-redundant transfrags if they share the 5' end (if they differ only at the 3' end)) -G generic GFF input file(s): do not assume Cufflinks GTF, do not discard any intron-redundant transfrags)