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9.0 years ago
pinikoma
•
0
Is there an existing dataset with snp (vcf) with possible codons?
Thanks, pini.
Is there an existing dataset with snp (vcf) with possible codons?
Thanks, pini.
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Annotation tools like snpEff, Annovar and VEP produce annotation tags for synonymous and non-synonymous mutations. A line corresponding to non-synonymous mutation will contain information about the codon change(something like tCa/tTa) and amino acid change (something like S/T). You just need to annotate your VCF file or download a VCF file that has been annotated using one of these tools.
thanks a lot !
You will need to explain your premise and problem for a more specific solution. A good general resource is HGMD.