Question: Is there any program to manually draw gene clusters?
0
gravatar for dago
4.1 years ago by
dago2.5k
Germany
dago2.5k wrote:

I am aware of the multiple post on how make figure containing gene cluster and genomic regions.

I have a slightly different question, is there any program that allows me to draw manually small gene clusters, keeping the dimension of genes and distance consistent?

I was thinking to a program that allows me to draw genes, and allows me to consistently choose their length and the distance among them.

 

Is there anything like that?

 

 

 

gene cluster sequence genome gene • 2.6k views
ADD COMMENTlink modified 4.0 years ago • written 4.1 years ago by dago2.5k
1

Do you have coding knowledge? If so, which languages? I know some libraries which could be really useful.

ADD REPLYlink written 4.1 years ago by Dan D6.8k

Linux, some basic R and Python

ADD REPLYlink modified 4.1 years ago • written 4.1 years ago by dago2.5k
0
gravatar for arnstrm
4.1 years ago by
arnstrm1.7k
Ames, IA
arnstrm1.7k wrote:

If you can represent those genes in GFF format, then you can try GenomeTools for graphing them. I think you can use almost any genome browser once you have the custom GFF file (for your gene cluster).

 

 

ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by arnstrm1.7k

Thanks for the reply. I am actually looking for a tool which is in between a graphic program and a genome browser. Basically I would simply like to to add arrows as genes and select the respective length in accordance with teh dimension of the gene. I do not have a GFF file for the region I am interested in.

ADD REPLYlink modified 4.1 years ago • written 4.1 years ago by dago2.5k
0
gravatar for HG
4.1 years ago by
HG1.1k
Germany
HG1.1k wrote:

Have a look :

http://easyfig.sourceforge.net/


 

ADD COMMENTlink written 4.1 years ago by HG1.1k
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