Hi all,
I have calculated the MEDIAN_CV_COVERAGE
, however, what the meaning of this measurement? I have checked the related discussion at seqanswers and asked the question there. In brief, if the MEDIAN_CV_COVERAGE
as the defined on wiki, the calculated value should be larger than the output of picard. In my data sets, this value just range between 0.2 and 1.7. To my understand, this value will definitely larger than 0 for normal samples. Because the coverage for high expressed genes should be very high and the variation for the top 1000 highly expressed genes will be large. Am I right?
Thank you!
Best,
p
Hi Sean Davis, Thank you for your answer. I have misunderstood this for variation of expression level across genes.
I wonder how the coverage was calculated, because the value of
MEDIAN_CV_COVERAGE
ranges from 0.2 to 1.7 in my samples. I guess the coverage of one gene is calculated as the coverage CV across all positions.You are correct.