software to caculate gene frequency based on SNP ped and map file
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6.0 years ago
xiaojuhu13 ▴ 150

I had SNP-genotype(Illumina SNP-chip) data(ped and map files). Now I'd like to construct phylogeny tree with bootstrap supportĀ based on total 46 populations. I used the Phylip for the analysis, but how to use the ped and map files to caculate gene frequency as input for the GendistĀ for the population genetic distance?

SNP genotype • 1.6k views
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