Question: Steps to process CNV level 3 files from TCGA database
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gravatar for Na Sed
5.2 years ago by
Na Sed290
United States
Na Sed290 wrote:

I am trying to process the CNV files downloaded from TCGA database. Actually, I am not familiar with this type of data and it is the first time I am working on CNV data.

Before, with help of guys, I could extract the name of genes for each region. I was surprised  when I found out many genes for each segment ( I am not biologist!!).

Currently, I want to make a matrix like [genes x  segment_mean], but I don't know what should I do with these data. I searched about it in `google` as well as `Biostar` but I could not find any useful information. I appreciate if anyone help and introduce some texts, as well.

 

cnv tcga • 2.0k views
ADD COMMENTlink written 5.2 years ago by Na Sed290
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