Very confused here. I was able to visualize mi SNPs positions in a separated track in the UCSC Microbe table browser. Yet I am totally unable to get a file with the anotations of genomic regions where this SNPs fall in. The table for my custom track look like this:
track name="User Track" description="User Supplied Track (from Galaxy)" color=0,0,0 visibility=1
chr 1976 1977 SNP 0 +
chr 1848 1849 SNP 0 +
The "chr" was the only chromosome name that was accepted by the table browser. I had to modify my text file in order t get it accepted.
There is a way to get a table with both, my SNPs position and the Genebank RefSeq Anotation of the gene it falls in? I've seen that there are some code based solutions, but I am not able to get it yet. Is there any non code based way?