Question: Looking for a protein domain visualisation tool
0
gravatar for Saulius Lukauskas
4.5 years ago by
London, UK
Saulius Lukauskas530 wrote:

Before I go into inkscape, I thought I will ask the hive (as googling doesn't help too much). Does anyone know of a tool to visualise the protein domains schematically?

Particularly I am looking for something like PROSITE MyDomainsbut with the following features:

  • [A Must] Ability to visualise overlapping domains, PROSITE tool does that in a bit of a weird way
  • [A Must] Indication of positions at the endpoints of said domains. The ruler of PROSITE does not cut it.
  • [A must] some way to do this programatically, PROSITE is actually okay about this.
  • [nice to have] non visually-awful output
  • [nice to have] vector graphics output.

Anyone out there know of anything? There are quite a few visualisations of these domains in literature, I really don't want to believe they are all done manually.

visualisation • 1.5k views
ADD COMMENTlink modified 4.5 years ago by cdsouthan1.8k • written 4.5 years ago by Saulius Lukauskas530
0
gravatar for cdsouthan
4.5 years ago by
cdsouthan1.8k
cdsouthan1.8k wrote:

http://www.ebi.ac.uk/interpro/

ADD COMMENTlink written 4.5 years ago by cdsouthan1.8k

interpro doesn't let me add my own annotations, I'm afraid :( or does it?

ADD REPLYlink written 4.5 years ago by Saulius Lukauskas530
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