Looking for a protein domain visualisation tool
1
0
Entering edit mode
6.5 years ago

Before I go into inkscape, I thought I will ask the hive (as googling doesn't help too much). Does anyone know of a tool to visualise the protein domains schematically?

Particularly I am looking for something like PROSITE MyDomainsbut with the following features:

  • [A Must] Ability to visualise overlapping domains, PROSITE tool does that in a bit of a weird way
  • [A Must] Indication of positions at the endpoints of said domains. The ruler of PROSITE does not cut it.
  • [A must] some way to do this programatically, PROSITE is actually okay about this.
  • [nice to have] non visually-awful output
  • [nice to have] vector graphics output.

Anyone out there know of anything? There are quite a few visualisations of these domains in literature, I really don't want to believe they are all done manually.

visualisation • 2.5k views
ADD COMMENT
0
Entering edit mode
ADD COMMENT
0
Entering edit mode

interpro doesn't let me add my own annotations, I'm afraid :( or does it?

ADD REPLY

Login before adding your answer.

Traffic: 1619 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6