Hi,
I am trying to write a wrapper to run blast on our servers, running it off the NCBI would be too slow.
I am beginning this process by looking at the galaxy tutorial
1) I got this GC content example to work. But was curious, in #3 Create Tool Definition of the url above,
<command interpreter="perl">toolExample.pl $input $output</command>
What does $input
mean? Where is it coming from? It cannot come from <inputs>
directly below this code, since there is a diff between inputs
and input
. I have galaxy with biolinux, so an explicit file would be wonderful.
P.S. I read pretty much all of the doc on galaxy. Coping and pasting a URL will not help. Please give me a clear example since I have a limited Comp sci background. Thanks!