Entering edit mode
9.5 years ago
ckr123
▴
10
According to Broad Institute Firehose, there are four latest MAF files:
bcm.edu 214 214 140005 hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.somatic.maf.txt 38.6MB 14-Apr-15
bcm.edu 53 53 10986 hgsc.bcm.edu_COAD.SOLiD_DNASeq.1.somatic.maf.txt 3.4MB 24-Mar-15
bcm.edu 53 53 11578 hgsc.bcm.edu-COAD-from-BCM-Firehose-CRC-08nov11.maf.txt 2.8MB 18-Dec-12
broad.mit.edu 102 102 48984 broad.mit.edu_COAD.IlluminaGA_DNASeq.1.somatic.maf.txt 12.3MB 14-Apr-15
broad.mit.edu 102 102 50982 hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.broad.mit.edu.maf.txt 12.8MB 23-Jul-12
Three of the five files were modified on 2015, but when I tried to locate these files on NCI and TCGA data portal, the latest files were still from 2013. Any idea about where to find the 2015 files?
MAF File Name Tumor Samples:Normal Samples MAF Version Archive Name Deploy Date
hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.somatic.maf 220:221 version 2.4 hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.Level_2.1.5.0 18-Jun-13
hgsc.bcm.edu_COAD.SOLiD_DNASeq.1.somatic.maf 53:53:00 version 2.4 hgsc.bcm.edu_COAD.SOLiD_DNASeq.Level_2.1.7.0 30-Jul-13
MAF File Name Tumor Samples:Normal Samples MAF Version Archive Name Deploy Date
hgsc.bcm.edu_READ.IlluminaGA_DNASeq.1.somatic.maf 81:81 version 2.4 hgsc.bcm.edu_READ.IlluminaGA_DNASeq.Level_2.1.6.0 18-Jun-13
hgsc.bcm.edu_READ.SOLiD_DNASeq.1.somatic.maf 35:35:00 version 2.4 hgsc.bcm.edu_READ.SOLiD_DNASeq.Level_2.1.7.0 30-Jul-13
Do you know the difference between Mutation_Packager_Calls and Mutation_Packager_Oncotated_Calls, please?