I have downloded TCGA Breast cancer normalised data sets from 1000 samples form RNA seq V2 . The counts files have only two coloumns such as Gene_id and Normalised Counts.
My goal is to do Differential expression annalysis among these datasets, with various other clinical conditions such as Age, treated/untreated etc.
Please let me know whats the best possible way to do it. or is it possible to do DGE analysis with various clinical parameters ?
Your suggestions is highily valuable. Thanks a lot for your help.
modified 5.3 years ago
Biostar ♦♦ 20
5.5 years ago by
David_emir • 370