Forum: Suggestions for small tools to add to Galaxy
1
gravatar for Devon Ryan
4.2 years ago by
Devon Ryan91k
Freiburg, Germany
Devon Ryan91k wrote:

I'd like to solicit suggestions/requests for (ideally small and relatively easy to compile) programs that currently aren't in the Galaxy Toolshed but might be useful if added. Some local folks are going to have a "Galaxy Developer Day" in a couple weeks, with the goal to have a bunch of developers/bioinformaticians get familiar with integrating tools into Galaxy. So if you're at least vaguely familiar with what's available in Galaxy and can think of a nice thing that should be added then please post it as an answer.

All reasonable suggestions will receive up votes!

galaxy forum • 1.4k views
ADD COMMENTlink modified 4.2 years ago by martenson380 • written 4.2 years ago by Devon Ryan91k
3
gravatar for rasche.eric
4.2 years ago by
rasche.eric70
United States
rasche.eric70 wrote:

http://genometools.org/ they have a nice suite of tools for working with GFF3. I'd meant to get around to them (hence them being on the IUC's TODO list), but hadn't yet. 

ADD COMMENTlink written 4.2 years ago by rasche.eric70

Thanks, I'll add that to the suggestions.
 

ADD REPLYlink written 4.2 years ago by Devon Ryan91k
1

The IUC TODO list that Eric linked is also a nice resource of tools with need of wrapping.

ADD REPLYlink written 4.2 years ago by martenson380

Agreed, I probably should have mentioned that we're doing this with Björn Grüning, who's also one of the IUC folks.
 

ADD REPLYlink written 4.2 years ago by Devon Ryan91k
2
gravatar for Brian Bushnell
4.2 years ago by
Walnut Creek, USA
Brian Bushnell16k wrote:

I suggest...  *cough* BBDuk.

ADD COMMENTlink written 4.2 years ago by Brian Bushnell16k

I'll suggest that. I was actually thinking about many of the BBMap tools. Are many/any in Galaxy already? If not, I'd just add everything in there to the list as well.

ADD REPLYlink written 4.2 years ago by Devon Ryan91k

Nope, none are in Galaxy currently.

ADD REPLYlink written 4.2 years ago by Brian Bushnell16k

Are there any updates for BBmap, BBDuk, BBMerge, Reformat etc in Galaxy Tool Shed, I will love to see them available :)

ADD REPLYlink modified 3.9 years ago • written 3.9 years ago by manekineko130
1
gravatar for martenson
4.2 years ago by
martenson380
PSU
martenson380 wrote:

If you look in the 'Tool Requests' list on our Trello board (https://trello.com/b/75c1kASa/galaxy-development) you can find other tool ideas to consider.

ADD COMMENTlink written 4.2 years ago by martenson380
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1697 users visited in the last hour