Question: 3’UTR sequences for Saccharomyces Cerevisiae (yeast)
0
gravatar for fire_water
3.9 years ago by
fire_water80
United States
fire_water80 wrote:

Hello,

I have a list of approximately 200 gene names and need to obtain the 3’UTR sequences for each gene. This is for Saccharomyces Cerevisiae (yeast) and an example gene name is YHL036W.

Does a publicly available tool exist that would allow me to upload my list of gene names and download the sequences?

Thank you for your help

sequence gene • 1.6k views
ADD COMMENTlink modified 3.9 years ago by Antonio R. Franco4.0k • written 3.9 years ago by fire_water80

You can try BioMart. You can upload your genes of interest and retrieve only 3' UTR sequences. Similar post: C: retrieval of upstream non-coding sequences

ADD REPLYlink written 3.9 years ago by Ashutosh Pandey11k
0
gravatar for Antonio R. Franco
3.9 years ago by
Spain. Universidad de Córdoba
Antonio R. Franco4.0k wrote:

Use Biomart. It will allow you to select any part of the genome you desire

ADD COMMENTlink written 3.9 years ago by Antonio R. Franco4.0k

Thank you. Biomart is a very nice tool. However, is it just me or are all of the 3' UTR sequences unavailable for Saccharomyces Cerevisiae ?

ADD REPLYlink written 3.9 years ago by fire_water80

Hi! Did you find an answer to this? I'd be really curious to know as I'm having the same problem getting 5' UTRs for S. cerevisiae... mitochondrial, to be specific. 

ADD REPLYlink written 3.8 years ago by gemma.atkinson0

Hi. I ended up contacting the folks at YeastGenome.org for assistance on how to query their database for the sequences. It's a bit of a process so I would recommend contacting them and explaining exactly what you're trying to do. They're very helpful. Good luck.

ADD REPLYlink written 3.8 years ago by fire_water80
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