Entering edit mode
8.9 years ago
asgar.hussain
•
0
Dear all,
I am using Olego for mapping and Quantas for quantification of alternative splicing. But I am not able to understand the output of countit (summarize_splicing_wrapper.pl
). Following is the output of the perl script for cassete exons. In this output file, I am not able to understand name, isoform1Tags, isoform2Tags, exonTags, inclusionJunction1Tags, inclusionJunction2Tags and skipping junctionTags.
#chrom chromStart chromEnd name score strand type isoformIDs isoform1Tags isoform2Tags exonTags inclusionJunction1Tags inclusionJunction2Tags skippingJunctionTags
chr19 58862756 58863920 CA-1-4217-4315-4402-4812[INC][1/20] 0 - cass INC/SKIP 9.3075437747 1.6924562253 9.3075437747 0.3075437747 0.3075437747 1.6924562253