I have FASTQ files and on start of my read I have 7 nucleotides tag - I would like to extract reads with this specific tag.
I would like to search in first 15 nucleotides of my reads, if match - extract this read to new fastq files.
Thank you for any ideas or help.
any other tools for sam question?
Why? Are all of these tools inadequate?
There's a wonderful quote in Jurassic Park: "...were so preoccupied with whether they could, they didn't stop to think if they should."
Nice :) Jurassic Park has a lot of apropos quotables for genetic research...
Personally, I like "Life will find a way"
"Life ... uhh ... finds a way" :)
My meme was more eloquent ;)
We need an /r/biostars
I am actually stuck in python code for same question. hence asked for suggestions.
Don't add answers unless you're answering the original question. Use Add Reply or Add Comment instead. Please read https://www.biostars.org/t/how-to/
I'm moving this to a comment on the top-level post now.