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• Pan Genomics for specially genus or higher taxa
  Hi I know several tools for core/pan genomics in bacteria. I really like Roary. What i know about...
• how to use pan-genome in python?
  how to use pan-genomics in python, can anyone help about this? If there is an article or a link t...
• Pan- and core- genome in bacteria
  Hi, I want to find pan genome in bacteria, which include subsequent analysis of core, dispensabl...
• Annotating Core and Pan genome
  Hello, I have used get_homologues pipeline to predict core and pan genome among a group of bacte...
• Pan-genome using BPGA
  Hi Can anybody tell me how to get pan genome size using BPGA tool. It give core pan genome size w...
• Core And Pan Genome Comparative Analysis
  I have found out core genome of 30 bacterial species of same genus. I have unique genes of each s...
• Roary pan genome analysis: where can I find 'clustered_proteins' for the command Roary query_pan_genome -a union -g clustered_proteins *.gff
  I am analysing a group of bacterial genomes with Roary. The core and pan genome estimates are wor...
• Any relation between pan genome and genome plasticity?
  Hello, I have some confusion related to pan genome and genome plasticity. Pan genome = core gen...
• Question about Coverage and identity for a good prediction of Pan-proteome
  Dear colleagues, I want to predict the pan-proteome on 25 strains of the same species (each stra...
• Is it useful to calculate profile hmm from core genome clusters?
  I did a core/pan-genome analysis for twelve bacterial strains which are closely related. So I ha...
• Heat Map Of Pan-Genome
  Hi I have constructed a pan-genome using reciprocal blast hits(RBH) of 5 species genome.As expec...
• How To Find The Pan Genome Of 30 Bacterial Strains
  I have found out the core ortholog set (Core Genome) of 30 bacterial strains using NCBI Blast Pac...
• Questions about Panseq
  Hi, Recently I started using Panseq (literally yesterday), recommended by a fellow Biostars user...
• Pan and core Genome prediction from OrthoMCL output
  Hai biostars I did Orthomcl clustering with 7 genome and i got more than 9000 clusters. How ...
• Aligner to work with PAN genomes and short reads
  Is it possible to align short reads to a PAN Genome? Which aligner can be used for this purpose?
• Pan genome analysis tool (PGAP)
  Hi, After searching on internet I found this Tools called PGAP which comes under the top two Pa...
• Has anyone used GET_HOMOLOGUES
  Has anyone used GET_HOMOLOGUES for pan-genome protein conservation/ortholog analysis? http://www....
• BPGA Functional Analysis not working
  Hi, I have been using BPGA (Bacterial Pan Genome Analysis) to analyze a set of genomes in order t...
• Pan-genome construction from pairwise species blast results
  Hello everyone, I have some doubts regarding pan-genome analyses and would be grateful if someon...
• Why Is There Lack Of Go Terms With A Prokaryotic Genome.
  Hi I'm using Blast2Go to annotate and compare the core genome and the whole genome of a species o...
• PAN and CORE genome analysis
  Hi, I have an OTU biom file (obtained from Closed reference QIIME 1.8.0 v) contains 65 samples, I...
• One gene shows alignment with core sequences as well as with accessory gene sequences at 50% identity?
  Hi I have done pan-genome analysis with 0.5% identity cutoff using BPGA tool. and it has given me...