How to visualize a bam file in UCSC Genome Browser
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9.0 years ago
Azhar ▴ 50

I have a 1.31 GB bam file, is it too big to view in ucsc browser, if it is then what is the alternate solutions
ChIP-Seq • 10k views
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Just searching a little bit on google...:

My recommendation is IGV.

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8.9 years ago

Use bigwig, for conversion and visualizations, check
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9.0 years ago
Qi Zhao ▴ 50

You may try IGV to visualize your data. Here is the web link: http://www.broadinstitute.org/igv/

Good luck
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You can also download the data tracks from UCSC and add it IGV.

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9.0 years ago

Try this link: I tried to visualize the bam file in IGV or genome viewer
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How to install IGV veiwer cz it is jnlp file not exe.

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Download IGV_2.3.23.zip from this link: http://www.broadinstitute.org/software/igv/download then unzip it in unzipped file you can find an icon as igv.jar. Click to install.

Ask any question you have please

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