What would be a good quality indicator for samples after sequencing?

Question

[veroamilbe]

I have some gene panel sequencing samples with varying median read counts - is this a sufficient measure for quality? Are there other possibilities to measure quality?

I only want to use high quality samples as controls in my pipeline.

Answer 1

[Antonio R. Franco]

If you are dealing with high-thorughput sequences, I think one of the best way to get a quality indication is using FastQC