I have micro array data in GSE format from http://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE1739. My simple question is how to normalize this data ? All I could see was gene symbols and IDs. I could not find numbers to normalize (As my background is Mathematics, very poor knowledge about gene data). I know there is one R package
limma with function
normalizeWithinArrays. But no idea how to implement on the data set mentioned above. Please provide some insight. Thanks in advance.