access to dataset in insilicodb
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7.0 years ago

when I write this cammand in R

eset1 = getDataset("GSE3188", "GPL570", norm="FRMA", features = "gene", curation = 9272)

after loading library(insilicobd)

R says:  INSILICODB: You are not allowed to access this dataset.

 

i dont know what is problem and how can i solve it?

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7.0 years ago
PoGibas 5.0k

From the documentation: 1.2 Check the accessibility of data

"You need to login to access datasets and datasetinfo"

 

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tank you Pgibas

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6.0 years ago

i have the same problem. and i have logged in using username and md5 hash password.

Command used:-

biocLite("inSilicoDb")

library(inSilicoDb)

install.packages('digest', repos='http://cran.us.r-project.org')

library(digest)

InSilicoLogin("****@gmail.com", digest::digest('PASSWORD', algo='md5', serialize=FALSE));

eset42743 = getDataset("GSE42743", "GPL570", "FRMA", genes=TRUE);

It shows warning: INSILICODB: The bioinformatics pipeline is now running. An email will be sent when computation is finished. INSILICODB: Dataset GSE42743, GPL570, CURESET, PROBE, ORIGINAL, 20339, RNA, Oral Cavity Cancer Compared to Adjacent "Normal" Tissue [Validation Set], queued, 110, GSE42743GPL570_RNA_ORIGINALPROBE_20339.RData

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