Need to find a next generation sequencing data processing software for comparing WGS data

Question

[vassialk]

Need to find a next generation sequencing software for comparing WGS data. Tried:

NextGene

UGENE

CLCGenomics

GeneousPro

RidomSeqSphere

Galaxy

R

Want more, please advise. Thanks

[Michael Dondrup]

"Want more, please advise", is not a real question. If you'd be specific about your requirements you could get advice, what do you mean by "comparing WGS data", what didn't work out? As a sign of courtesy to the forum, please think this through in advance and be as specific as possible.

[PoGibas]

Be more specific (do you define awk,bash,GNU parallel as software?) and check what was posted here before: How To Decide Which Software To Use For Building Automated Ngs Analysis Pipeline

Answer 1

[Sean Davis]

Fairly comprehensive lists of software, categorized in multiple ways, are available here:

http://seqanswers.com/wiki/SEQanswers

http://omictools.com/

 

[vassialk]

thank you, second link was uknown to me, can you please tell a concrete desktop software, which is good for WGS data analysis?

[apelin20]

Geneious, pojausta. Edit: I wonder why this post was on the first page, every post seems 5 months old.

Answer 2

[Genomics]

Try Strand NGS (formerly Avadis NGS). For more details, visit www.strand-ngs.com