Need to find a next generation sequencing data processing software for comparing WGS data
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7.3 years ago
vassialk ▴ 200

Need to find a next generation sequencing software for comparing WGS data. Tried:

NextGene

UGENE

CLCGenomics

GeneousPro

RidomSeqSphere

Galaxy

R

Want more, please advise. Thanks

wgs sequencing • 2.3k views
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"Want more, please advise", is not a real question. If you'd be specific about your requirements you could get advice, what do you mean by "comparing WGS data", what didn't work out? As a sign of courtesy to the forum, please think this through in advance and be as specific as possible.

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Be more specific (do you define awk,bash,GNU parallel as software?) and check what was posted here before: How To Decide Which Software To Use For Building Automated Ngs Analysis Pipeline

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7.3 years ago

Fairly comprehensive lists of software, categorized in multiple ways, are available here:

http://seqanswers.com/wiki/SEQanswers

http://omictools.com/

 

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thank you, second link was uknown to me, can you please tell a concrete desktop software, which is good for WGS data analysis?

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Geneious, pojausta. Edit: I wonder why this post was on the first page, every post seems 5 months old.

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6.7 years ago
Genomics ▴ 70

Try Strand NGS (formerly Avadis NGS). For more details, visit www.strand-ngs.com

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