parsing the samtools view out put

Question

[fi1d18]

Hey guys,

I have two sam files, one containing both mapped and unmapped reads and another just containing unmapped reads, I am in the result interpretation now, can you tell please how I can parse the result in such case?

[Ashutosh Pandey]

You need to define your problem clearly. Unless you define your problem in a simple manner we can't help you.

[fi1d18]

You are right,

After doing some analysis I have these files, then I should ask my supervisor the later step and ask my question later.