Entering edit mode
8.9 years ago
mangfu100
▴
800
Hi all
I want to extract reference allele count or non-reference allele count with strand information using mpileup.
Before using mpileup, I treid to understand its options and functions but there are some options I didn't get it.
First, what is -C
options?
Although I have read its explanation and examples, I don't know how to use it and why it is necessary to extract allele count.
Otherwise, Could you give me a recommended command to extract ref allele count using mpileup?
There are too many arguments in mpileup and I don't know which one to choose.