I saw that many people had problem retrieving sequences from blast db.
I could find a way around it, so maybe someone has a god link/suggestion/reference I could use.
I want to extract sequences from nr db.
I have a list of identifier, obtained from a previous blast search
gi|740719731|ref|WP_038505017.1| gi|740813732|ref|WP_038599015.1| gi|740864652|ref|WP_038649903.1| gi|740899195|ref|WP_038684443.1| gi|740906294|ref|WP_038691542.1|
Now I try to query only
740864652 740899195 740906294
WP_038649903.1 WP_038684443.1 WP_038691542.1
blastdbcmd -db ~/Documents/nr_blastdb/nr -entry_batch Ids
But I get always:
Error: XXXXX: OID not found
What am I missing here?