Question: Bismark out put in IGV
0
gravatar for kanwarjag
4.6 years ago by
kanwarjag1.0k
United States
kanwarjag1.0k wrote:

Any help how I can visualize bismark out put and visualize Bisulfite sequencing data in IGV. Is there a separate browser?

 

Thanks

 

 

igv bisulfite seq • 1.7k views
ADD COMMENTlink written 4.6 years ago by kanwarjag1.0k

Which output? The .cov files can be viewed as is since they're just modified bedGraph files.

ADD REPLYlink written 4.6 years ago by Devon Ryan93k

There is also a bisulfite mode built in to the latest IGV. It's activated under "color alignments" menu. 

ADD REPLYlink written 4.6 years ago by Matt Shirley9.2k
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