Question: Bismark out put in IGV
0
gravatar for kanwarjag
3.9 years ago by
kanwarjag950
United States
kanwarjag950 wrote:

Any help how I can visualize bismark out put and visualize Bisulfite sequencing data in IGV. Is there a separate browser?

 

Thanks

 

 

igv bisulfite seq • 1.5k views
ADD COMMENTlink written 3.9 years ago by kanwarjag950

Which output? The .cov files can be viewed as is since they're just modified bedGraph files.

ADD REPLYlink written 3.9 years ago by Devon Ryan88k

There is also a bisulfite mode built in to the latest IGV. It's activated under "color alignments" menu. 

ADD REPLYlink written 3.9 years ago by Matt Shirley8.9k
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