Question: microarray gene datasets
1
gravatar for bioinfo
4.2 years ago by
bioinfo50
research
bioinfo50 wrote:

I am having some doubts on How can we integrate GSE with different GPL????

gene • 803 views
ADD COMMENTlink written 4.2 years ago by bioinfo50
2

could you be a bit more precise and share your doubts with us please?

ADD REPLYlink written 4.2 years ago by Michael Dondrup46k
2

A GSE is intrinsically linked to a GPL by virtue of the assay leading to the data for the GSE having been performed using an array described by a GPL.  It is not clear from your question why one would be interested in using a different GPL than that for array that was used to generate the data.  Could you give a concrete example of what you are thinking?

ADD REPLYlink written 4.2 years ago by Sean Davis25k
1

thanks Sean, could you state what the acronyms  GPL/GSE mean in this context?

ADD REPLYlink written 4.2 years ago by Michael Dondrup46k
1

GPL=GEO Platform=Array Design Description

GSE=GEO Series=collection of samples and matching array design(s)

ADD REPLYlink written 4.2 years ago by Sean Davis25k
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