I am having some doubts on How can we integrate GSE with different GPL????
could you be a bit more precise and share your doubts with us please?
A GSE is intrinsically linked to a GPL by virtue of the assay leading to the data for the GSE having been performed using an array described by a GPL. It is not clear from your question why one would be interested in using a different GPL than that for array that was used to generate the data. Could you give a concrete example of what you are thinking?
thanks Sean, could you state what the acronyms GPL/GSE mean in this context?
GPL=GEO Platform=Array Design Description
GSE=GEO Series=collection of samples and matching array design(s)