How to model a short miRNA Sequence

Question

[verma]

Hello Everyone,

Please let me know how can I model a short miRNA motif residues into a pdb format.

Waiting for your quick response.

Regards,
Garima Verma.

[Michael]

Where would you get the 3D coordinates of the atoms from?

Guess this question fell under the carpet because it was very unclear what OP wanted to achieve.

[verma]

Thanks for your answer. I have already did the modeling and extract the results for my short miRNA motifs through other computational software's. Thanks again.

[GenoMax]

Please use ADD REPLY/ADD COMMENT when responding to existing posts to keep threads logically organized.

Answer 1

[Michael]

You can get 3D structures of complexes of miRNA with e.g. the RISC complex from PDB. Search for "miRNA" there.