Question: missing probeID in affymetrix using oligo package
0
gravatar for benhrif.oussama
5.2 years ago by
benhrif.oussama0 wrote:

Hello,

I am working on an affymetrix project , my data are files.cel, and i am using oligo package , my script is

celFiles<-list.celfiles(dir,full.names=TRUE)
rawData<-read.celfiles(celFiles)
library("pd.hugene.2.1.st")
ppData<-rma(rawData,target = "probeset")
mat<-exprs(ppData)

the row names of my matrix gene expression (mat) are

"16650001" "16650003" "16650005" "16650007" "16650009" "16650011" "16650013" "16650015" "16650017"

how can i replace this rownames by the probe ID of my data, like (12547_at)

 

Thank you

 

 

 

affymetrix • 1.6k views
ADD COMMENTlink modified 5.1 years ago by Biostar ♦♦ 20 • written 5.2 years ago by benhrif.oussama0

Hi, how did you solved your problem?

ADD REPLYlink written 7 weeks ago by Thind Amarinder30
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