I am trying to calculate ANI values (ANIm and ANIb) using Jspecies in Ubuntu 14.04.
For the majority of comparisons, Jspecies is not able to attribute a ANI value (instead it gives "nan" result). Funny is that sometimes it works well.
Here is the log when errors occur:
[12:57]ERROR509909[Thread-11] - api.calculation.anim.RunANIm.calculateEMA(RunANIm.java:75) - .cluster file doesn't exist # seems to be related to nucmer
[12:58]ERROR580395[Thread-11] - api.calculation.blast.FormatDB.runFormatDB(FormatDB.java:61) - [formatdb] FATAL ERROR: Database base name must be provided with multiple input files
Do you know an alternative software to jspecies?