I found some tools for Venn diagrams on http://omictools.com/site/search/?phrase=venn&go=Search&isNewSearch=true. However, they require gene lists as input. Is there any other way to create Venn charts from microarray data?
Exactly what information are you planning to plot? do they overlap between the conditions? I think using geneids for venn is pretty useful as it will clearly show you the total number of genes that are shared among the treatments.
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