Question: PSI BLAST to create PSSM with BLAST+
0
gravatar for farberak
3.9 years ago by
farberak0
Bosnia And Herzegovina
farberak0 wrote:

I would like to generate PSSM in blast+. I can run the program and I have required databases downloaded in my computer (nr protein data). What are the necessary steps and commands.

 

Thank you 

 

blast • 2.5k views
ADD COMMENTlink modified 3.0 years ago by sanrrone20 • written 3.9 years ago by farberak0
1
gravatar for sanrrone
3.0 years ago by
sanrrone20
Chile
sanrrone20 wrote:

just execute the command psiblast -query myfasta.fasta -db mydb -num_iterations 3 -out_pssm mypssm.smp

ADD COMMENTlink written 3.0 years ago by sanrrone20
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