Get bedgraph file from CEL affymetrix file
0
0
Entering edit mode
6.6 years ago
flyamer ▴ 40

Hi! I need to get a bed(graph) (or wig) file from some affymetrix CEL files from GEO (GSE28728). I can't find any easy way for this, although it seems like it should be a very common thing to do. I'm really not familiar with microarray analysis though. Maybe someone can give me an advice about it? Any tool is fine for me as long as it works under linux.

chip transcriptome cel • 1.8k views
ADD COMMENT
0
Entering edit mode

Maybe this old solution by seidel is still valid: A: How To Convert Cel File To Wig File

ADD REPLY
0
Entering edit mode

Thank you, I've seen it already though. Unfortunately it requires Affy Tiling Array software which only works under Windows as far as I can tell.

ADD REPLY

Login before adding your answer.

Traffic: 1423 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6