I am beginner for linkage analysis and I have exome sequence data. So I want to ask;
1) Which program should I use for linkage analysis (Plink, Merlin,etc..) ? Which one is efficient?
2) How can I convert vcf file for linkage analysis file ? Could you please explain convertion of file for linkage analysis tool in a detail ? I dont know anything about that. Onar is there any tool to convert vcf file for linkage ?
There is a post about that ;
Linkage With Whole Exome Data But I dont understand :)