is the snp in a open reading frame ?

Question

[pinikoma]

Hello all,

How do I check if a selected snp is in an open reading frame (any orf..)?

Thanks,
pini.

[Sam]

So in another word, whether if it is within a gene? One possible tool will be Annovar or you can use UCSC genome browser I guess.

Answer 1

[cdsouthan]

BLASTX the full dbSNP nucleotide string against a low-redundancy protein database