i have a two group of RNA-seq data of an insect , one of them is control (not treated) another one is treated (low temperature) group. we assembled the raw reads and got unigenes, and did the related differential expression analysis (e.g. change fold=log2(treated/control)),then got many upregulated and down regulated transcripts.
now my questions are:
can i use these data to draw heat maps? if i could, how to do it (could u give me a brief approach )? could you also recommend some tools for windows or linux!?