Calculating Heterozygosity of the genome
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8.9 years ago
vicky ▴ 30

Hi All

I have a genome data with heterozygous sites marked as (M,R,W,S,Y,R,S,K,W,Y,K).

Can I some how calculate the average heterozygosity of the genome?

Heterozygosity • 3.8k views
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8.9 years ago
Adrian Pelin ★ 2.6k

Either as heterozygous sites / ALL sites, or SNPs per kb are some common measurements. You can also do per 100 bp, and represent is as a % heterozygosity.

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