Question: Maximum likelihood user tree analysis in MEGA !
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gravatar for morteza.mahmoudisaber
5.4 years ago by
Japan
morteza.mahmoudisaber70 wrote:

I am trying to calculate branch specific genetic distances for a bunch of mulitple alignments using MEGA command line, but even when I use the user tree phylogenetic tree for my alignments, MEGA produces its own phylogenetic tree topology!

Is there a way I could force MEGA command line to calculate maximum likelihood distances for each branch based on the phylogenetic tree topology  which I have specified? Or is there any better command line software for calculating genetic distances for  phylogenetic tree branches?

mega genetic distance • 2.2k views
ADD COMMENTlink modified 5.4 years ago by Biostar ♦♦ 20 • written 5.4 years ago by morteza.mahmoudisaber70
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