Question: Extract variability between coordinates
0
gravatar for egustavsson
3.9 years ago by
egustavsson10
Canada
egustavsson10 wrote:

Hi all,

Could anyone suggest how to extract variability within a range, i.e. candidate regions, from multiple vcf files?

I have exome data from a number of samples, as well as SNP array data, and I'm looking for recessive variability from the exome data within generated runs of homozygosity. 

Thanks for your time

ADD COMMENTlink written 3.9 years ago by egustavsson10
1
gravatar for Ashutosh Pandey
3.9 years ago by
Philadelphia
Ashutosh Pandey11k wrote:

Tabix can help you if you are looking for variants in a given genomic region (http://samtools.sourceforge.net/tabix.shtml)

ADD COMMENTlink written 3.9 years ago by Ashutosh Pandey11k

Thanks Ashutosh, tabix will do excatly what Im' looking for.

ADD REPLYlink written 3.9 years ago by egustavsson10

Ok great. Moving it to answer. 

ADD REPLYlink written 3.9 years ago by Ashutosh Pandey11k
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