Entering edit mode
8.9 years ago
pmr
•
0
I want to generate a distance matrix that contains coordinates for different samples. I found this script in Qiime, but I am having trouble getting the formatting of the mapping file right.
http://qiime.org/scripts/distance_matrix_from_mapping.html
Here is an excerpt of what my input file looks like:
#SampleID Latitude, Longitude
AF133791 14.730135, 101.982833
AM260974 34.033333, 73.4
AM260980 34.05, 73.53333333
This gave the error:
ValueError: One of these columns or both do not exist: 'Latitute' or 'Longitude' in the mapping file. Existing columns are: ['Latitude,', 'Longitude']
I also tried removing tabs between Latitude and Longitude, but this gave the error:
qiime.parse.QiimeParseError: No header line was found in mapping file.
Any help on formatting the mapping file is appreciated.