Assembling integron gene-cassettes from metagenomes
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7.4 years ago
bioinfo ▴ 830

Has anyone assembled (targeted-assembly) integrons gene-cassettes from the raw or assembled metagenomic data before? I found a paper that used specifically SOAPdenovo with customised Perl scripts to detect specific sites and other genes that present in integrons (http://omics.informatics.indiana.edu/integron/). Is there any other way to do it using any kinds of assembler? Just in case anyone wrote a script before to do that please share.

metagenomics Assembly integrons targeted-assembly • 1.4k views
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