I run MEME using the command
meme fasta_file -dna -w 20 -o output. In the output folder, the meme.html file shows no motifs were discovered. However, the meme.txt file clearly shows there are many motifs with very low p-values, and inside the output folder there is a figure illustrating the top motif. What's the problem with my command?
Thank you very much! I appreciate any of your comments.