microT-CDS: ENSEMBL build for miRNA target coodinates
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7.0 years ago
jpsangio ▴ 10

Does anyone know what build of ENSEMBL the results of microT-CDS target positions are currently based on?  The 'Help' page indicates v69, but that is not the case.  I have tried with he current ENSEMBL (v80) and this is not the case either.  Any help would be appreciated.

An example of the current output exists below.  The regions on chr 9 indicated don't correspond to those in ENSEMBL v69.  

Transcript Id Gene Id(name) Mirna Name miTG score
       
ENST00000361264 ENSG00000198876 (DCAF12) hsa-miR-146a-5p 1
UTR3 9:34086853-34086881 0.003033854  
UTR3 9:34086698-34086726 0.00646972  
UTR3 9:34086570-34086598 0.131451917  
microT-CDS DIANA • 2.7k views
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Have you asked the authors ? On the other hand, this is the kind of information any serious database should mention on their web page.

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