I have a question regarding one of cd-hit suite utilities (cd-hit-est-2d) (http://weizhong-lab.ucsd.edu/cd-hit/). I downloaded it, compiled it and tried to use it, but each time I run it I got a segmentation fault.
./cd-hit-est-2d -i db1.fna -i2 db2.fna -o out -G 1 -n 10 -B 1 -p 1 -g 1 -c 0.98 -M 0 -T 0 > cd-hit-est.log &
I searched for it, I got a solution (http://www.bioinformatics.org/bugs/index.php?func=detailbug&bugid=1103&groupid=350) of changing stack_size but I can't find cd-hi-classic.c++ and my ulimit is already unlimited.
How to increase my stack_size?