Question: retrieving probeset ID of a gene from affymetrix database or anywhere alse
0
gravatar for A
5.0 years ago by
A3.8k
A3.8k wrote:

hello all,

i have a gene (AtHKT1), how i can retrieve its probeset ID??

thank you

sequence gene • 1.5k views
ADD COMMENTlink modified 5.0 years ago by poisonAlien2.8k • written 5.0 years ago by A3.8k
2
gravatar for alolex
5.0 years ago by
alolex910
United States
alolex910 wrote:

You can create a free account on NetAffx Analysis Center (http://www.affymetrix.com/analysis/index.affx?navMode=cat530006&aId=netaffxNav) and search for the gene there, you can use the gene ID conversion tool provided by DAVID (http://david.abcc.ncifcrf.gov/conversion.jsp), or you can search TAIR as this looks to be an Arabidopsis gene.  

ADD COMMENTlink written 5.0 years ago by alolex910

thank you

ADD REPLYlink written 5.0 years ago by A3.8k
2
gravatar for poisonAlien
5.0 years ago by
poisonAlien2.8k
Asgard
poisonAlien2.8k wrote:

Goto Biomart 

choose ensemble as database,

choose Homo sapiens as gene dataset

click filters - input your gene name in 'Input external references ID list'

click Attributes -> external -> Microarray probes and select your platform.

click results at the top. 

ADD COMMENTlink written 5.0 years ago by poisonAlien2.8k

thank you

ADD REPLYlink written 5.0 years ago by A3.8k
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