While working on a ChIP-Seq data set consisting out of 16 samples i want to see the differences in peak height. To achieve this i first need a merged peak location. To achieve this i was thinking of a tool which could merge all 16 of my peak files at once. E.G. bedtools merge / multiinter. Only thing is that i have the feeling this is not exaclty what i want and it becomes difficult to see if bedtools does a good job here.
I want to achieve a peak location in the following way:
A: start = 25 : end = 50
B: start = 30 : end = 65
C: start = 20 : end = 45
MERGED: start = 20 : end = 65.
Which tool/ mode from bedtools can achieve this result. Any hints are very much appreciated. Thanks!