Question: TruSeq Exome Enrichment Kit Targeted Regions BED File
0
gravatar for Dave Tang
5.4 years ago by
Dave Tang190
Japan
Dave Tang190 wrote:

Hello,

I've been trying to look for the BED file that corresponds to the regions targeted by the Illumina TruSeq Exome Enrichment Kit. Every link that I've found is either broken or links to a page where the BED file is not provided, such as http://assets.stage-www.illumina.com/downloads/truseq_exome_targeted_regions_bed_file.html.

Does anybody know where I can access the official BED file?

Best,

Dave

truseq illumina exome • 5.3k views
ADD COMMENTlink modified 5.4 years ago by Can Holyavkin240 • written 5.4 years ago by Dave Tang190
4
gravatar for Can Holyavkin
5.4 years ago by
Can Holyavkin240
Turkey
Can Holyavkin240 wrote:

As far as I know, TruSeq Exome Enrichment Kit is no longer available. It is replaced by Nextera Rapid Capture Exome kit. So they removed everything about the old kit.

However, some of us still have the bed file. :) Here it is: https://app.box.com/s/p2m1ahb7w3xhme5rd01rx5na5lw8ch95

 

ADD COMMENTlink written 5.4 years ago by Can Holyavkin240

No wonder it doesn't exist anymore! Thank you Can for the answer and for the file.

ADD REPLYlink written 5.4 years ago by Dave Tang190

Thanks so much!

ADD REPLYlink written 5.3 years ago by jonathancmw0

I am analyzing old exome data and this was extremely helpful. Thanks!

ADD REPLYlink written 4.6 years ago by a.jeremy.willsey0

It may be late for this, but the bed file you supplied covers exactly the same amount of region as the nextera rapid capture expanded exome kit covers. They may be exactly the same.

EDIT: They actually do cover the same regions - https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-449

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by anp375170
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 847 users visited in the last hour