Question: State of art gene prediction tools for grass genomes
0
gravatar for chjiao3456
5.5 years ago by
chjiao345640
Michigan State University, USA
chjiao345640 wrote:

Hi, I'm new to field of gene prediction. Are there any review papers or tutorials talking about the state of art gene prediction tools for grass genomes, like rice, maize and wheat etc. As far as I know, there are some specifications for grass genes, like GC content. Thanks very much.

grass genome gene prediction • 1.2k views
ADD COMMENTlink modified 4.8 years ago by Biostar ♦♦ 20 • written 5.5 years ago by chjiao345640
1
gravatar for 5heikki
5.5 years ago by
5heikki9.1k
Finland
5heikki9.1k wrote:
You could train any decent gene prediction tool with closest relative genomes..
ADD COMMENTlink written 5.5 years ago by 5heikki9.1k

Thank you. So do you mean usually there are no specific tools for grass genes prediction?

ADD REPLYlink written 5.5 years ago by chjiao345640
1
gravatar for Juke34
5.5 years ago by
Juke344.9k
Sweden
Juke344.9k wrote:
You could read that paper it is an exellent review. http://www.nature.com/nrg/journal/v13/n5/full/nrg3174.html For that kind of purpose I would look at the MakerP annotation pipeline.
ADD COMMENTlink written 5.5 years ago by Juke344.9k

Thanks, this is a very good review paper. However, I don't know whether this paper includes the latest tools for gene prediction/annotation, since it was published in 2012.

ADD REPLYlink written 5.5 years ago by chjiao345640
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