how to convert 012 data to ACTG data with plink?
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9.1 years ago
xinhui.wang ▴ 550

I am working on genotype data with Plink. I convert the ACTG data to 0,1,2 data with ---recodeA. Now, I would like to change it back and what coud I do?

Thanks and with best regards,

Xinhui

SNP • 3.7k views
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I am looking for something like that too. Did you figure out @xinhui.wang?

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9.1 years ago
alesssia ▴ 580

You can use --alleleACGT to go from numbers to letters. Hope this helps!

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I tried and seems that plink could not recognize the 012 data as ped file.

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What error do you have?

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