Question: Is there a way to separate full-length contigs of a assembled transcriptome from other contigs?
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gravatar for seta
4.3 years ago by
seta1.2k
Sweden
seta1.2k wrote:

Dear all,

I would like to merge several assemblies resulted different K-mer, but I prefer to separate probable full-length contigs from other contigs (merging full-length contigs would not be our desired!). I did de novo assembly using CLC genomic software and assess full-length transcript using the inserted tool in the Trinity package. Now, I want to merge all contigs of different k-mer, but not full length ones. Please help me out how to extract full-length contigs? thanks in advance

blast rna-seq alignment assembly • 1.3k views
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