Question: Why some genomes are not available in genbank ftp?
0
gravatar for fhsantanna
5.0 years ago by
fhsantanna490
Brazil
fhsantanna490 wrote:

I have tried to download some genomes using the genbank ftp (ftp://ftp.ncbi.nih.gov/genomes/). However I have noticed that some are available in NCBI portal but not in ftp. Example: Paenibacillus borealis

Why there is this difference between these locations?

genbank ftp • 985 views
ADD COMMENTlink modified 5.0 years ago by h.mon30k • written 5.0 years ago by fhsantanna490
2
gravatar for h.mon
5.0 years ago by
h.mon30k
Brazil
h.mon30k wrote:

It is available probably under the "all" subfolder, e.g. Paenibacillus borealis is here:

ftp://ftp.ncbi.nih.gov/genomes/all/GCF_000758665.1_ASM75866v1
ADD COMMENTlink written 5.0 years ago by h.mon30k

Is there a particular reason why this genome is not included in "BACTERIA" or "BACTERIA_DRAFT" subfolder?

ADD REPLYlink written 5.0 years ago by fhsantanna490

I really do not know, did not find anything about it here.

ADD REPLYlink written 5.0 years ago by h.mon30k
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